Cropping Macro In Imagej Returns Unidentified Variable Error Image Macro ‘undefined variable in line 1’ error bug or newbie mistake? hello, i have several batches of images which i am trying to use to train an ilastik pipeline for analysis. ilastik doesn’t like that they’re not all the exact same dimensions, so i am trying to use a macro to crop every…. I have seen online on the imagej forum that this macro works for other people. i have done some debugging and know that i am getting the error because the code does not go into the while loop when i run the macro, so there isn't a value for x1 returned by the getcursorloc function.

Imagej Macro Undefined Variable Error Usage Issues Image Sc Forum I have done some debugging and know that i am getting the error because the code does not go into the while loop when i run the macro, so there isn't a value for x1 returned by the getcursorloc function. I am using this macro from this paper: quantifying abdominal pigmentation in drosophila melanogaster pmc (measurement of pigmentation macro). i was having an issue a few weeks ago about an error in a line and then it was working fine. Imagej macros for uniformly cropping, adding scalebars and resizing pcm images [m] & uniformly cropping and renaming photos [s]. plugins > macros > install (ctrl shift m) press the "m" key to crop, add 1um scale bar (22px == 1um) and save in "processed" sub directory. For each file, it opens the image, calculates the new dimensions for cropping (50 pixels removed from both left and right), performs the crop, and saves the image in the same directory with the same name but in tiff format.

Imagej Macro Undefined Variable Error Usage Issues Image Sc Forum Imagej macros for uniformly cropping, adding scalebars and resizing pcm images [m] & uniformly cropping and renaming photos [s]. plugins > macros > install (ctrl shift m) press the "m" key to crop, add 1um scale bar (22px == 1um) and save in "processed" sub directory. For each file, it opens the image, calculates the new dimensions for cropping (50 pixels removed from both left and right), performs the crop, and saves the image in the same directory with the same name but in tiff format. I have written this macro, and am able to run it properly by dragging it to imagej window, and then clicking run. but when i am double clicking on it, without having imagej open, it is showing me error:. My understanding is that global variables need to be set with the var command. see a simple example: if you don’t use var above, you will return “set outside” whereas with var you get “set inside” as expected. more at the macro language reference here: macro language. thank you both @haesleinhuepf @dnmason!. I suspect i've forgotten to define a variable, and would greatly appreciate help on how to fix this. here's the code: input = "c: users admin onedrive documents work starvation feb 2023 macrotestimages"; output = "c: users admin onedrive documents work starvation feb 2023 initial10foreachbinaryld"; list = getfilelist (input);. The macro contains wrong characters (quotation marks 0x93 and 0x95 instead of 0x22 and for 3 points 0x85 instead of 3 times 0x2e). transpose them with an appropriate editor and it should run, but there is also an undefined variable “str” in line 15.

Fiji Undefined Variable Error When Running Macro In Imagej Stack I have written this macro, and am able to run it properly by dragging it to imagej window, and then clicking run. but when i am double clicking on it, without having imagej open, it is showing me error:. My understanding is that global variables need to be set with the var command. see a simple example: if you don’t use var above, you will return “set outside” whereas with var you get “set inside” as expected. more at the macro language reference here: macro language. thank you both @haesleinhuepf @dnmason!. I suspect i've forgotten to define a variable, and would greatly appreciate help on how to fix this. here's the code: input = "c: users admin onedrive documents work starvation feb 2023 macrotestimages"; output = "c: users admin onedrive documents work starvation feb 2023 initial10foreachbinaryld"; list = getfilelist (input);. The macro contains wrong characters (quotation marks 0x93 and 0x95 instead of 0x22 and for 3 points 0x85 instead of 3 times 0x2e). transpose them with an appropriate editor and it should run, but there is also an undefined variable “str” in line 15.